DeepLearningExamples/PyTorch/LanguageModeling/BERT/data/bertPrep.py

# Copyright (c) 2019 NVIDIA CORPORATION. All rights reserved.
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#     http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.

import BookscorpusTextFormatting
import Downloader
import TextSharding
import WikicorpusTextFormatting

import argparse
import itertools
import multiprocessing
import os
import pprint
import subprocess


def main(args):
    working_dir = os.environ['BERT_PREP_WORKING_DIR']

    print('Working Directory:', working_dir)
    print('Action:', args.action)
    print('Dataset Name:', args.dataset)

    if args.input_files:
        args.input_files = args.input_files.split(',')

    hdf5_tfrecord_folder_prefix = "_lower_case_" + str(args.do_lower_case) + "_seq_len_" + str(args.max_seq_length) \
                                  + "_max_pred_" + str(args.max_predictions_per_seq) + "_masked_lm_prob_" + str(args.masked_lm_prob) \
                                  + "_random_seed_" + str(args.random_seed) + "_dupe_factor_" + str(args.dupe_factor)

    directory_structure = {
        'download' : working_dir + '/download',    # Downloaded and decompressed
        'extracted' : working_dir +'/extracted',    # Extracted from whatever the initial format is (e.g., wikiextractor)
        'formatted' : working_dir + '/formatted_one_article_per_line',    # This is the level where all sources should look the same
        'sharded' : working_dir + '/sharded_' + "training_shards_" + str(args.n_training_shards) + "_test_shards_" + str(args.n_test_shards) + "_fraction_" + str(args.fraction_test_set),
        'tfrecord' : working_dir + '/tfrecord'+ hdf5_tfrecord_folder_prefix,
        'hdf5': working_dir + '/hdf5' + hdf5_tfrecord_folder_prefix
    }

    print('\nDirectory Structure:')
    pp = pprint.PrettyPrinter(indent=2)
    pp.pprint(directory_structure)
    print('')

    if args.action == 'download':
        if not os.path.exists(directory_structure['download']):
            os.makedirs(directory_structure['download'])

        downloader = Downloader.Downloader(args.dataset, directory_structure['download'])
        downloader.download()

    elif args.action == 'text_formatting':
        assert args.dataset != 'google_pretrained_weights' and args.dataset != 'nvidia_pretrained_weights' and args.dataset != 'squad' and args.dataset != 'mrpc', 'Cannot perform text_formatting on pretrained weights'

        if not os.path.exists(directory_structure['extracted']):
            os.makedirs(directory_structure['extracted'])

        if not os.path.exists(directory_structure['formatted']):
            os.makedirs(directory_structure['formatted'])

        if args.dataset == 'bookscorpus':
            books_path = directory_structure['download'] + '/bookscorpus'
            #books_path = directory_structure['download']
            output_filename = directory_structure['formatted'] + '/bookscorpus_one_book_per_line.txt'
            books_formatter = BookscorpusTextFormatting.BookscorpusTextFormatting(books_path, output_filename, recursive=True)
            books_formatter.merge()

        elif args.dataset == 'wikicorpus_en':
            if args.skip_wikiextractor == 0:
                path_to_wikiextractor_in_container = '/workspace/wikiextractor/WikiExtractor.py'
                wikiextractor_command = path_to_wikiextractor_in_container + ' ' + directory_structure['download'] + '/' + args.dataset + '/wikicorpus_en.xml ' + '-b 100M --processes ' + str(args.n_processes) + ' -o ' + directory_structure['extracted'] + '/' + args.dataset
                print('WikiExtractor Command:', wikiextractor_command)
                wikiextractor_process = subprocess.run(wikiextractor_command, shell=True, check=True)
                #wikiextractor_process.communicate()

            wiki_path = directory_structure['extracted'] + '/wikicorpus_en'
            output_filename = directory_structure['formatted'] + '/wikicorpus_en_one_article_per_line.txt'
            wiki_formatter = WikicorpusTextFormatting.WikicorpusTextFormatting(wiki_path, output_filename, recursive=True)
            wiki_formatter.merge()

        elif args.dataset == 'wikicorpus_zh':
            assert False, 'wikicorpus_zh not fully supported at this time. The simplified/tradition Chinese data needs to be translated and properly segmented still, and should work once this step is added.'
            if args.skip_wikiextractor == 0:
                path_to_wikiextractor_in_container = '/workspace/wikiextractor/WikiExtractor.py'
                wikiextractor_command = path_to_wikiextractor_in_container + ' ' + directory_structure['download'] + '/' + args.dataset + '/wikicorpus_zh.xml ' + '-b 100M --processes ' + str(args.n_processes) + ' -o ' + directory_structure['extracted'] + '/' + args.dataset
                print('WikiExtractor Command:', wikiextractor_command)
                wikiextractor_process = subprocess.run(wikiextractor_command, shell=True, check=True)
                #wikiextractor_process.communicate()

            wiki_path = directory_structure['extracted'] + '/wikicorpus_zh'
            output_filename = directory_structure['formatted'] + '/wikicorpus_zh_one_article_per_line.txt'
            wiki_formatter = WikicorpusTextFormatting.WikicorpusTextFormatting(wiki_path, output_filename, recursive=True)
            wiki_formatter.merge()

            assert os.stat(output_filename).st_size > 0, 'File glob did not pick up extracted wiki files from WikiExtractor.'

    elif args.action == 'sharding':
        # Note: books+wiki requires user to provide list of input_files (comma-separated with no spaces)
        if args.dataset == 'bookscorpus' or 'wikicorpus' in args.dataset or 'books_wiki' in args.dataset:
            if args.input_files is None:
                if args.dataset == 'bookscorpus':
                    args.input_files = [directory_structure['formatted'] + '/bookscorpus_one_book_per_line.txt']
                elif args.dataset == 'wikicorpus_en':
                    args.input_files = [directory_structure['formatted'] + '/wikicorpus_en_one_article_per_line.txt']
                elif args.dataset == 'wikicorpus_zh':
                    args.input_files = [directory_structure['formatted'] + '/wikicorpus_zh_one_article_per_line.txt']
                elif args.dataset == 'books_wiki_en_corpus':
                    args.input_files = [directory_structure['formatted'] + '/bookscorpus_one_book_per_line.txt', directory_structure['formatted'] + '/wikicorpus_en_one_article_per_line.txt']

            output_file_prefix = directory_structure['sharded'] + '/' + args.dataset + '/' + args.dataset

            if not os.path.exists(directory_structure['sharded']):
                os.makedirs(directory_structure['sharded'])

            if not os.path.exists(directory_structure['sharded'] + '/' + args.dataset):
                os.makedirs(directory_structure['sharded'] + '/' + args.dataset)

            # Segmentation is here because all datasets look the same in one article/book/whatever per line format, and
            # it seemed unnecessarily complicated to add an additional preprocessing step to call just for this.
            # Different languages (e.g., Chinese simplified/traditional) may require translation and
            # other packages to be called from here -- just add a conditional branch for those extra steps
            segmenter = TextSharding.NLTKSegmenter()
            sharding = TextSharding.Sharding(args.input_files, output_file_prefix, args.n_training_shards, args.n_test_shards, args.fraction_test_set)

            sharding.load_articles()
            sharding.segment_articles_into_sentences(segmenter)
            sharding.distribute_articles_over_shards()
            sharding.write_shards_to_disk()

        else:
            assert False, 'Unsupported dataset for sharding'

    elif args.action == 'create_tfrecord_files':
        assert False, 'TFrecord creation not supported in this PyTorch model example release.' \
                      ''
        if not os.path.exists(directory_structure['tfrecord'] + "/" + args.dataset):
            os.makedirs(directory_structure['tfrecord'] + "/" + args.dataset)

        def create_record_worker(filename_prefix, shard_id, output_format='tfrecord'):
            bert_preprocessing_command = 'python /workspace/bert/create_pretraining_data.py'
            bert_preprocessing_command += ' --input_file=' + directory_structure['sharded'] + '/' + args.dataset + '/' + filename_prefix + '_' + str(shard_id) + '.txt'
            bert_preprocessing_command += ' --output_file=' + directory_structure['tfrecord'] + '/' + args.dataset + '/' + filename_prefix + '_' + str(shard_id) + '.' + output_format
            bert_preprocessing_command += ' --vocab_file=' + args.vocab_file
            bert_preprocessing_command += ' --do_lower_case' if args.do_lower_case else ''
            bert_preprocessing_command += ' --max_seq_length=' + str(args.max_seq_length)
            bert_preprocessing_command += ' --max_predictions_per_seq=' + str(args.max_predictions_per_seq)
            bert_preprocessing_command += ' --masked_lm_prob=' + str(args.masked_lm_prob)
            bert_preprocessing_command += ' --random_seed=' + str(args.random_seed)
            bert_preprocessing_command += ' --dupe_factor=' + str(args.dupe_factor)
            bert_preprocessing_process = subprocess.Popen(bert_preprocessing_command, shell=True)

            last_process = bert_preprocessing_process

            # This could be better optimized (fine if all take equal time)
            if shard_id % args.n_processes == 0 and shard_id > 0:
                bert_preprocessing_process.wait()
            return last_process

        output_file_prefix = args.dataset

        for i in range(args.n_training_shards):
            last_process =create_record_worker(output_file_prefix + '_training', i)

        last_process.wait()

        for i in range(args.n_test_shards):
            last_process = create_record_worker(output_file_prefix + '_test', i)

        last_process.wait()


    elif args.action == 'create_hdf5_files':
        last_process = None

        if not os.path.exists(directory_structure['hdf5'] + "/" + args.dataset):
            os.makedirs(directory_structure['hdf5'] + "/" + args.dataset)

        def create_record_worker(filename_prefix, shard_id, output_format='hdf5'):
            bert_preprocessing_command = 'python /workspace/bert/create_pretraining_data.py'
            bert_preprocessing_command += ' --input_file=' + directory_structure['sharded'] + '/' + args.dataset + '/' + filename_prefix + '_' + str(shard_id) + '.txt'
            bert_preprocessing_command += ' --output_file=' + directory_structure['hdf5'] + '/' + args.dataset + '/' + filename_prefix + '_' + str(shard_id) + '.' + output_format
            bert_preprocessing_command += ' --vocab_file=' + args.vocab_file
            bert_preprocessing_command += ' --do_lower_case' if args.do_lower_case else ''
            bert_preprocessing_command += ' --max_seq_length=' + str(args.max_seq_length)
            bert_preprocessing_command += ' --max_predictions_per_seq=' + str(args.max_predictions_per_seq)
            bert_preprocessing_command += ' --masked_lm_prob=' + str(args.masked_lm_prob)
            bert_preprocessing_command += ' --random_seed=' + str(args.random_seed)
            bert_preprocessing_command += ' --dupe_factor=' + str(args.dupe_factor)
            bert_preprocessing_process = subprocess.Popen(bert_preprocessing_command, shell=True)

            last_process = bert_preprocessing_process

            # This could be better optimized (fine if all take equal time)
            if shard_id % args.n_processes == 0 and shard_id > 0:
                bert_preprocessing_process.wait()
            return last_process

        output_file_prefix = args.dataset

        for i in range(args.n_training_shards):
            last_process = create_record_worker(output_file_prefix + '_training', i)

        last_process.wait()

        for i in range(args.n_test_shards):
            last_process = create_record_worker(output_file_prefix + '_test', i)

        last_process.wait()


if __name__ == "__main__":
    parser = argparse.ArgumentParser(
        description='Preprocessing Application for Everything BERT-related'
    )

    parser.add_argument(
        '--action',
        type=str,
        help='Specify the action you want the app to take. e.g., generate vocab, segment, create tfrecords',
        choices={
            'download',               # Download and verify mdf5/sha sums
            'text_formatting',        # Convert into a file that contains one article/book per line
            'sharding',               # Convert previous formatted text into shards containing one sentence per line
            'create_tfrecord_files',  # Turn each shard into a TFrecord with masking and next sentence prediction info
            'create_hdf5_files'       # Turn each shard into a HDF5 file with masking and next sentence prediction info
        }
    )

    parser.add_argument(
        '--dataset',
        type=str,
        help='Specify the dataset to perform --action on',
        choices={
            'bookscorpus',
            'wikicorpus_en',
            'wikicorpus_zh',
            'books_wiki_en_corpus',
            'google_pretrained_weights',
            'nvidia_pretrained_weights',
            'mrpc',
            'sst-2',
            'squad',
            'all'
        }
    )

    parser.add_argument(
        '--input_files',
        type=str,
        help='Specify the input files in a comma-separated list (no spaces)'
    )

    parser.add_argument(
        '--n_training_shards',
        type=int,
        help='Specify the number of training shards to generate',
        default=256
    )

    parser.add_argument(
        '--n_test_shards',
        type=int,
        help='Specify the number of test shards to generate',
        default=256
    )

    parser.add_argument(
        '--fraction_test_set',
        type=float,
        help='Specify the fraction (0..1) of the data to withhold for the test data split (based on number of sequences)',
        default=0.1
    )

    parser.add_argument(
        '--segmentation_method',
        type=str,
        help='Specify your choice of sentence segmentation',
        choices={
            'nltk'
        },
        default='nltk'
    )

    parser.add_argument(
        '--n_processes',
        type=int,
        help='Specify the max number of processes to allow at one time',
        default=4
    )

    parser.add_argument(
        '--random_seed',
        type=int,
        help='Specify the base seed to use for any random number generation',
        default=12345
    )

    parser.add_argument(
        '--dupe_factor',
        type=int,
        help='Specify the duplication factor',
        default=5
    )

    parser.add_argument(
        '--masked_lm_prob',
        type=float,
        help='Specify the probability for masked lm',
        default=0.15
    )

    parser.add_argument(
        '--max_seq_length',
        type=int,
        help='Specify the maximum sequence length',
        default=512
    )

    parser.add_argument(
        '--max_predictions_per_seq',
        type=int,
        help='Specify the maximum number of masked words per sequence',
        default=20
    )

    parser.add_argument(
        '--do_lower_case',
        type=int,
        help='Specify whether it is cased (0) or uncased (1) (any number greater than 0 will be treated as uncased)',
        default=1
    )

    parser.add_argument(
        '--vocab_file',
        type=str,
        help='Specify absolute path to vocab file to use)'
    )

    parser.add_argument(
        '--skip_wikiextractor',
        type=int,
        help='Specify whether to skip wikiextractor step 0=False, 1=True',
        default=0
    )

    parser.add_argument(
        '--interactive_json_config_generator',
        type=str,
        help='Specify the action you want the app to take. e.g., generate vocab, segment, create tfrecords'
    )

    args = parser.parse_args()
    main(args)